Jupyter Notebook Kernel Can't Start after pip upgrade notebook and nbconvert












0















I've been using Jupyter Notebook 4.5 (Anaconda distribution) for a while. And today I tried to upgrade it to 5 using conda upgrade notebook. After a little while it was done (many packages were downloaded and updated). But I immediately got a '500 internal error'. Then I pip upgraded my nbconvert as suggested by some thread on the sub. But now my kernel can't start.



The error I get from my cmd:



ERROR:tornado.application:Exception in callback (<zmq.sugar.socket.Socket object
at 0x0000000004E03B40>, <function wrap.<locals>.null_wrapper at 0x0000000004E43
400>)
Traceback (most recent call last):
File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
oioloop.py", line 887, in start
handler_func(fd_obj, events)
File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
ostack_context.py", line 275, in null_wrapper
return fn(*args, **kwargs)
File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
entloopzmqstream.py", line 450, in _handle_events
self._handle_recv()
File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
entloopzmqstream.py", line 480, in _handle_recv
self._run_callback(callback, msg)
File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
entloopzmqstream.py", line 432, in _run_callback
callback(*args, **kwargs)
File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
ostack_context.py", line 275, in null_wrapper
return fn(*args, **kwargs)
File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
nelkernelbase.py", line 276, in dispatcher
return self.dispatch_shell(stream, msg)
File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
nelkernelbase.py", line 226, in dispatch_shell
self.pre_handler_hook()
File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
nelkernelbase.py", line 241, in pre_handler_hook
self.saved_sigint_handler = signal(SIGINT, default_int_handler)
File "C:UsersbliuAppDataLocalContinuumAnaconda3libsignal.py", line 47,
in signal
handler = _signal.signal(_enum_to_int(signalnum), _enum_to_int(handler))
ValueError: signal only works in main thread


I tried to upgrade my ipykernel but got this error message:



Cannot uninstall 'ipykernel'. It is a distutils installed project and thus we ca
nnot accurately determine which files belong to it which would lead to only a pa
rtial uninstall.


Problem fixed.










share|improve this question





























    0















    I've been using Jupyter Notebook 4.5 (Anaconda distribution) for a while. And today I tried to upgrade it to 5 using conda upgrade notebook. After a little while it was done (many packages were downloaded and updated). But I immediately got a '500 internal error'. Then I pip upgraded my nbconvert as suggested by some thread on the sub. But now my kernel can't start.



    The error I get from my cmd:



    ERROR:tornado.application:Exception in callback (<zmq.sugar.socket.Socket object
    at 0x0000000004E03B40>, <function wrap.<locals>.null_wrapper at 0x0000000004E43
    400>)
    Traceback (most recent call last):
    File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
    oioloop.py", line 887, in start
    handler_func(fd_obj, events)
    File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
    ostack_context.py", line 275, in null_wrapper
    return fn(*args, **kwargs)
    File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
    entloopzmqstream.py", line 450, in _handle_events
    self._handle_recv()
    File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
    entloopzmqstream.py", line 480, in _handle_recv
    self._run_callback(callback, msg)
    File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
    entloopzmqstream.py", line 432, in _run_callback
    callback(*args, **kwargs)
    File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
    ostack_context.py", line 275, in null_wrapper
    return fn(*args, **kwargs)
    File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
    nelkernelbase.py", line 276, in dispatcher
    return self.dispatch_shell(stream, msg)
    File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
    nelkernelbase.py", line 226, in dispatch_shell
    self.pre_handler_hook()
    File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
    nelkernelbase.py", line 241, in pre_handler_hook
    self.saved_sigint_handler = signal(SIGINT, default_int_handler)
    File "C:UsersbliuAppDataLocalContinuumAnaconda3libsignal.py", line 47,
    in signal
    handler = _signal.signal(_enum_to_int(signalnum), _enum_to_int(handler))
    ValueError: signal only works in main thread


    I tried to upgrade my ipykernel but got this error message:



    Cannot uninstall 'ipykernel'. It is a distutils installed project and thus we ca
    nnot accurately determine which files belong to it which would lead to only a pa
    rtial uninstall.


    Problem fixed.










    share|improve this question



























      0












      0








      0








      I've been using Jupyter Notebook 4.5 (Anaconda distribution) for a while. And today I tried to upgrade it to 5 using conda upgrade notebook. After a little while it was done (many packages were downloaded and updated). But I immediately got a '500 internal error'. Then I pip upgraded my nbconvert as suggested by some thread on the sub. But now my kernel can't start.



      The error I get from my cmd:



      ERROR:tornado.application:Exception in callback (<zmq.sugar.socket.Socket object
      at 0x0000000004E03B40>, <function wrap.<locals>.null_wrapper at 0x0000000004E43
      400>)
      Traceback (most recent call last):
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
      oioloop.py", line 887, in start
      handler_func(fd_obj, events)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
      ostack_context.py", line 275, in null_wrapper
      return fn(*args, **kwargs)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
      entloopzmqstream.py", line 450, in _handle_events
      self._handle_recv()
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
      entloopzmqstream.py", line 480, in _handle_recv
      self._run_callback(callback, msg)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
      entloopzmqstream.py", line 432, in _run_callback
      callback(*args, **kwargs)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
      ostack_context.py", line 275, in null_wrapper
      return fn(*args, **kwargs)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
      nelkernelbase.py", line 276, in dispatcher
      return self.dispatch_shell(stream, msg)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
      nelkernelbase.py", line 226, in dispatch_shell
      self.pre_handler_hook()
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
      nelkernelbase.py", line 241, in pre_handler_hook
      self.saved_sigint_handler = signal(SIGINT, default_int_handler)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsignal.py", line 47,
      in signal
      handler = _signal.signal(_enum_to_int(signalnum), _enum_to_int(handler))
      ValueError: signal only works in main thread


      I tried to upgrade my ipykernel but got this error message:



      Cannot uninstall 'ipykernel'. It is a distutils installed project and thus we ca
      nnot accurately determine which files belong to it which would lead to only a pa
      rtial uninstall.


      Problem fixed.










      share|improve this question
















      I've been using Jupyter Notebook 4.5 (Anaconda distribution) for a while. And today I tried to upgrade it to 5 using conda upgrade notebook. After a little while it was done (many packages were downloaded and updated). But I immediately got a '500 internal error'. Then I pip upgraded my nbconvert as suggested by some thread on the sub. But now my kernel can't start.



      The error I get from my cmd:



      ERROR:tornado.application:Exception in callback (<zmq.sugar.socket.Socket object
      at 0x0000000004E03B40>, <function wrap.<locals>.null_wrapper at 0x0000000004E43
      400>)
      Traceback (most recent call last):
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
      oioloop.py", line 887, in start
      handler_func(fd_obj, events)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
      ostack_context.py", line 275, in null_wrapper
      return fn(*args, **kwargs)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
      entloopzmqstream.py", line 450, in _handle_events
      self._handle_recv()
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
      entloopzmqstream.py", line 480, in _handle_recv
      self._run_callback(callback, msg)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packageszmqev
      entloopzmqstream.py", line 432, in _run_callback
      callback(*args, **kwargs)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagestornad
      ostack_context.py", line 275, in null_wrapper
      return fn(*args, **kwargs)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
      nelkernelbase.py", line 276, in dispatcher
      return self.dispatch_shell(stream, msg)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
      nelkernelbase.py", line 226, in dispatch_shell
      self.pre_handler_hook()
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsite-packagesipyker
      nelkernelbase.py", line 241, in pre_handler_hook
      self.saved_sigint_handler = signal(SIGINT, default_int_handler)
      File "C:UsersbliuAppDataLocalContinuumAnaconda3libsignal.py", line 47,
      in signal
      handler = _signal.signal(_enum_to_int(signalnum), _enum_to_int(handler))
      ValueError: signal only works in main thread


      I tried to upgrade my ipykernel but got this error message:



      Cannot uninstall 'ipykernel'. It is a distutils installed project and thus we ca
      nnot accurately determine which files belong to it which would lead to only a pa
      rtial uninstall.


      Problem fixed.







      python anaconda jupyter-notebook






      share|improve this question















      share|improve this question













      share|improve this question




      share|improve this question








      edited Jan 18 at 14:39







      Bowen Liu

















      asked Jan 18 at 14:16









      Bowen LiuBowen Liu

      2841213




      2841213
























          1 Answer
          1






          active

          oldest

          votes


















          0














          Just found the solution:



          The reason was that my tornado version was still 4.2 but the new Jupyter requires 5.1. Unable to update tornado directly, I just reinstalled Jupyter Notebook:



          conda uninstall jupyter tornado
          conda install jupyter





          share|improve this answer























            Your Answer






            StackExchange.ifUsing("editor", function () {
            StackExchange.using("externalEditor", function () {
            StackExchange.using("snippets", function () {
            StackExchange.snippets.init();
            });
            });
            }, "code-snippets");

            StackExchange.ready(function() {
            var channelOptions = {
            tags: "".split(" "),
            id: "1"
            };
            initTagRenderer("".split(" "), "".split(" "), channelOptions);

            StackExchange.using("externalEditor", function() {
            // Have to fire editor after snippets, if snippets enabled
            if (StackExchange.settings.snippets.snippetsEnabled) {
            StackExchange.using("snippets", function() {
            createEditor();
            });
            }
            else {
            createEditor();
            }
            });

            function createEditor() {
            StackExchange.prepareEditor({
            heartbeatType: 'answer',
            autoActivateHeartbeat: false,
            convertImagesToLinks: true,
            noModals: true,
            showLowRepImageUploadWarning: true,
            reputationToPostImages: 10,
            bindNavPrevention: true,
            postfix: "",
            imageUploader: {
            brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
            contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
            allowUrls: true
            },
            onDemand: true,
            discardSelector: ".discard-answer"
            ,immediatelyShowMarkdownHelp:true
            });


            }
            });














            draft saved

            draft discarded


















            StackExchange.ready(
            function () {
            StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f54255824%2fjupyter-notebook-kernel-cant-start-after-pip-upgrade-notebook-and-nbconvert%23new-answer', 'question_page');
            }
            );

            Post as a guest















            Required, but never shown

























            1 Answer
            1






            active

            oldest

            votes








            1 Answer
            1






            active

            oldest

            votes









            active

            oldest

            votes






            active

            oldest

            votes









            0














            Just found the solution:



            The reason was that my tornado version was still 4.2 but the new Jupyter requires 5.1. Unable to update tornado directly, I just reinstalled Jupyter Notebook:



            conda uninstall jupyter tornado
            conda install jupyter





            share|improve this answer




























              0














              Just found the solution:



              The reason was that my tornado version was still 4.2 but the new Jupyter requires 5.1. Unable to update tornado directly, I just reinstalled Jupyter Notebook:



              conda uninstall jupyter tornado
              conda install jupyter





              share|improve this answer


























                0












                0








                0







                Just found the solution:



                The reason was that my tornado version was still 4.2 but the new Jupyter requires 5.1. Unable to update tornado directly, I just reinstalled Jupyter Notebook:



                conda uninstall jupyter tornado
                conda install jupyter





                share|improve this answer













                Just found the solution:



                The reason was that my tornado version was still 4.2 but the new Jupyter requires 5.1. Unable to update tornado directly, I just reinstalled Jupyter Notebook:



                conda uninstall jupyter tornado
                conda install jupyter






                share|improve this answer












                share|improve this answer



                share|improve this answer










                answered Jan 18 at 14:40









                Bowen LiuBowen Liu

                2841213




                2841213






























                    draft saved

                    draft discarded




















































                    Thanks for contributing an answer to Stack Overflow!


                    • Please be sure to answer the question. Provide details and share your research!

                    But avoid



                    • Asking for help, clarification, or responding to other answers.

                    • Making statements based on opinion; back them up with references or personal experience.


                    To learn more, see our tips on writing great answers.




                    draft saved


                    draft discarded














                    StackExchange.ready(
                    function () {
                    StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f54255824%2fjupyter-notebook-kernel-cant-start-after-pip-upgrade-notebook-and-nbconvert%23new-answer', 'question_page');
                    }
                    );

                    Post as a guest















                    Required, but never shown





















































                    Required, but never shown














                    Required, but never shown












                    Required, but never shown







                    Required, but never shown

































                    Required, but never shown














                    Required, but never shown












                    Required, but never shown







                    Required, but never shown







                    Popular posts from this blog

                    Liquibase includeAll doesn't find base path

                    How to use setInterval in EJS file?

                    Petrus Granier-Deferre