Python 3.4 Bioservices installation
I'm trying to install the bioservices : 1.2.5 on my Windows 7 with Python 3.4 installed. The path has the scripts included but I still continue to have the syntax error when trying to use 'pip install'.
I tried to install 'bioservices' using:
sudo pip install bioservices
sudo easy_install bioservices
pip install bioservices
Till now nothing worked.
Edit:* Now gives me another error:
After running pip install bioservices, on Windows powershell this error appears
Command python setup.py egg_info failed with error code 1 in C:UserRaquelAppDataLocalTemppip_build_RaquelSOAPpy
Storing debug log for failure in C:UserRaquelpippip.log
python pip
edited Jan 20 at 12:01
Cœur
18.1k9108148
asked May 5 '14 at 2:25
user3602771user3602771
112
add a comment |
I'm trying to install the bioservices : 1.2.5 on my Windows 7 with Python 3.4 installed. The path has the scripts included but I still continue to have the syntax error when trying to use 'pip install'.
I tried to install 'bioservices' using:
sudo pip install bioservices
sudo easy_install bioservices
pip install bioservices
Till now nothing worked.
Edit:* Now gives me another error:
After running pip install bioservices, on Windows powershell this error appears
Command python setup.py egg_info failed with error code 1 in C:UserRaquelAppDataLocalTemppip_build_RaquelSOAPpy
Storing debug log for failure in C:UserRaquelpippip.log
python pip
edited Jan 20 at 12:01
Cœur
18.1k9108148
asked May 5 '14 at 2:25
user3602771user3602771
112
Can you post the error messages you are getting as well as how you are doing it?
– drum
May 5 '14 at 2:28
I do this in the windows powershell with admin rights. python pip install bioservices and the error message is: File "<stdin>", line 1 pip install bioservices ^ SyntaxError: invalid syntax
– user3602771
May 5 '14 at 14:54
Another method to installing is to copy the bioservices folder into yourc:/python/Libdirectory. Then runpython setup.py install.
– drum
May 5 '14 at 17:58
@drum thanks that worked, but now using the extention gives me the following error
– user3602771
May 9 '14 at 23:14
BioServices v$Id: init.py 320 2014-02-28 13:31:27Z cokelaer $$, $Rev: 320 $ warning: pandas is not installed on your system Some features requires this library and future version of BioServices may use it. Traceback (most recent call last): File "C:UsersRaquelDocumentsUniversidadePythonworkspaceArrayarray.py", line 6, in <module> from bioservices import arrayexpress File "C:Python34libsite-packagesbioservices-1.2.6-py3.4.eggbioservices_init_.py", line 21, in <module> ImportError: No module named 'services'
– user3602771
May 9 '14 at 23:19
add a comment |
I'm trying to install the bioservices : 1.2.5 on my Windows 7 with Python 3.4 installed. The path has the scripts included but I still continue to have the syntax error when trying to use 'pip install'.
I tried to install 'bioservices' using:
sudo pip install bioservices
sudo easy_install bioservices
pip install bioservices
Till now nothing worked.
Edit:* Now gives me another error:
After running pip install bioservices, on Windows powershell this error appears
Command python setup.py egg_info failed with error code 1 in C:UserRaquelAppDataLocalTemppip_build_RaquelSOAPpy
Storing debug log for failure in C:UserRaquelpippip.log
python pip
edited Jan 20 at 12:01
Cœur
18.1k9108148
asked May 5 '14 at 2:25
user3602771user3602771
112
I'm trying to install the bioservices : 1.2.5 on my Windows 7 with Python 3.4 installed. The path has the scripts included but I still continue to have the syntax error when trying to use 'pip install'.
I tried to install 'bioservices' using:
sudo pip install bioservices
sudo easy_install bioservices
pip install bioservices
Till now nothing worked.
Edit:* Now gives me another error:
After running pip install bioservices, on Windows powershell this error appears
Command python setup.py egg_info failed with error code 1 in C:UserRaquelAppDataLocalTemppip_build_RaquelSOAPpy
Storing debug log for failure in C:UserRaquelpippip.log
python pip
python pip
edited Jan 20 at 12:01
Cœur
18.1k9108148
asked May 5 '14 at 2:25
user3602771user3602771
112
edited Jan 20 at 12:01
Cœur
18.1k9108148
asked May 5 '14 at 2:25
user3602771user3602771
112
edited Jan 20 at 12:01
Cœur
18.1k9108148
edited Jan 20 at 12:01
Cœur
18.1k9108148
edited Jan 20 at 12:01
Cœur
18.1k9108148
18.1k9108148
asked May 5 '14 at 2:25
user3602771user3602771
112
asked May 5 '14 at 2:25
user3602771user3602771
112
asked May 5 '14 at 2:25
user3602771user3602771
112
112
Can you post the error messages you are getting as well as how you are doing it?
– drum
May 5 '14 at 2:28
I do this in the windows powershell with admin rights. python pip install bioservices and the error message is: File "<stdin>", line 1 pip install bioservices ^ SyntaxError: invalid syntax
– user3602771
May 5 '14 at 14:54
Another method to installing is to copy the bioservices folder into yourc:/python/Libdirectory. Then runpython setup.py install.
– drum
May 5 '14 at 17:58
@drum thanks that worked, but now using the extention gives me the following error
– user3602771
May 9 '14 at 23:14
BioServices v$Id: init.py 320 2014-02-28 13:31:27Z cokelaer $$, $Rev: 320 $ warning: pandas is not installed on your system Some features requires this library and future version of BioServices may use it. Traceback (most recent call last): File "C:UsersRaquelDocumentsUniversidadePythonworkspaceArrayarray.py", line 6, in <module> from bioservices import arrayexpress File "C:Python34libsite-packagesbioservices-1.2.6-py3.4.eggbioservices_init_.py", line 21, in <module> ImportError: No module named 'services'
– user3602771
May 9 '14 at 23:19
add a comment |
Can you post the error messages you are getting as well as how you are doing it?
– drum
May 5 '14 at 2:28
I do this in the windows powershell with admin rights. python pip install bioservices and the error message is: File "<stdin>", line 1 pip install bioservices ^ SyntaxError: invalid syntax
– user3602771
May 5 '14 at 14:54
Another method to installing is to copy the bioservices folder into yourc:/python/Libdirectory. Then runpython setup.py install.
– drum
May 5 '14 at 17:58
@drum thanks that worked, but now using the extention gives me the following error
– user3602771
May 9 '14 at 23:14
BioServices v$Id: init.py 320 2014-02-28 13:31:27Z cokelaer $$, $Rev: 320 $ warning: pandas is not installed on your system Some features requires this library and future version of BioServices may use it. Traceback (most recent call last): File "C:UsersRaquelDocumentsUniversidadePythonworkspaceArrayarray.py", line 6, in <module> from bioservices import arrayexpress File "C:Python34libsite-packagesbioservices-1.2.6-py3.4.eggbioservices_init_.py", line 21, in <module> ImportError: No module named 'services'
– user3602771
May 9 '14 at 23:19
Can you post the error messages you are getting as well as how you are doing it?
– drum
May 5 '14 at 2:28
Can you post the error messages you are getting as well as how you are doing it?
– drum
May 5 '14 at 2:28
I do this in the windows powershell with admin rights. python pip install bioservices and the error message is: File "<stdin>", line 1 pip install bioservices ^ SyntaxError: invalid syntax
– user3602771
May 5 '14 at 14:54
I do this in the windows powershell with admin rights. python pip install bioservices and the error message is: File "<stdin>", line 1 pip install bioservices ^ SyntaxError: invalid syntax
– user3602771
May 5 '14 at 14:54
Another method to installing is to copy the bioservices folder into your
c:/python/Lib directory. Then run python setup.py install.– drum
May 5 '14 at 17:58
Another method to installing is to copy the bioservices folder into your
c:/python/Lib directory. Then run python setup.py install.– drum
May 5 '14 at 17:58
@drum thanks that worked, but now using the extention gives me the following error
– user3602771
May 9 '14 at 23:14
@drum thanks that worked, but now using the extention gives me the following error
– user3602771
May 9 '14 at 23:14
BioServices v$Id: init.py 320 2014-02-28 13:31:27Z cokelaer $$, $Rev: 320 $ warning: pandas is not installed on your system Some features requires this library and future version of BioServices may use it. Traceback (most recent call last): File "C:UsersRaquelDocumentsUniversidadePythonworkspaceArrayarray.py", line 6, in <module> from bioservices import arrayexpress File "C:Python34libsite-packagesbioservices-1.2.6-py3.4.eggbioservices_init_.py", line 21, in <module> ImportError: No module named 'services'
– user3602771
May 9 '14 at 23:19
BioServices v$Id: init.py 320 2014-02-28 13:31:27Z cokelaer $$, $Rev: 320 $ warning: pandas is not installed on your system Some features requires this library and future version of BioServices may use it. Traceback (most recent call last): File "C:UsersRaquelDocumentsUniversidadePythonworkspaceArrayarray.py", line 6, in <module> from bioservices import arrayexpress File "C:Python34libsite-packagesbioservices-1.2.6-py3.4.eggbioservices_init_.py", line 21, in <module> ImportError: No module named 'services'
– user3602771
May 9 '14 at 23:19
add a comment |
1 Answer
1
active
oldest
votes
BioServices depends on SOAPpy for the WSDL services.
Unfortunately, it looks like SOAPpy is not available for Python 3 (see e.g.,
What SOAP libraries exist for Python 3.x? ).
This may be the reason why the installation fails with
Command python setup.py egg_info failed with error code 1 in C:UserRaquelAppDataLocaTemppip_build_RaquelSOAPpy
edited May 23 '17 at 12:05
Community♦
11
answered May 30 '14 at 12:01
Thomas CokelaerThomas Cokelaer
8591610
add a comment |
Your Answer
StackExchange.ifUsing("editor", function () {
StackExchange.using("externalEditor", function () {
StackExchange.using("snippets", function () {
StackExchange.snippets.init();
});
});
}, "code-snippets");
StackExchange.ready(function() {
var channelOptions = {
tags: "".split(" "),
id: "1"
};
initTagRenderer("".split(" "), "".split(" "), channelOptions);
StackExchange.using("externalEditor", function() {
// Have to fire editor after snippets, if snippets enabled
if (StackExchange.settings.snippets.snippetsEnabled) {
StackExchange.using("snippets", function() {
createEditor();
});
}
else {
createEditor();
}
});
function createEditor() {
StackExchange.prepareEditor({
heartbeatType: 'answer',
autoActivateHeartbeat: false,
convertImagesToLinks: true,
noModals: true,
showLowRepImageUploadWarning: true,
reputationToPostImages: 10,
bindNavPrevention: true,
postfix: "",
imageUploader: {
brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
allowUrls: true
},
onDemand: true,
discardSelector: ".discard-answer"
,immediatelyShowMarkdownHelp:true
});
}
});
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f23463896%2fpython-3-4-bioservices-installation%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
BioServices depends on SOAPpy for the WSDL services.
Unfortunately, it looks like SOAPpy is not available for Python 3 (see e.g.,
What SOAP libraries exist for Python 3.x? ).
This may be the reason why the installation fails with
Command python setup.py egg_info failed with error code 1 in C:UserRaquelAppDataLocaTemppip_build_RaquelSOAPpy
edited May 23 '17 at 12:05
Community♦
11
answered May 30 '14 at 12:01
Thomas CokelaerThomas Cokelaer
8591610
add a comment |
BioServices depends on SOAPpy for the WSDL services.
Unfortunately, it looks like SOAPpy is not available for Python 3 (see e.g.,
What SOAP libraries exist for Python 3.x? ).
This may be the reason why the installation fails with
Command python setup.py egg_info failed with error code 1 in C:UserRaquelAppDataLocaTemppip_build_RaquelSOAPpy
edited May 23 '17 at 12:05
Community♦
11
answered May 30 '14 at 12:01
Thomas CokelaerThomas Cokelaer
8591610
add a comment |
BioServices depends on SOAPpy for the WSDL services.
Unfortunately, it looks like SOAPpy is not available for Python 3 (see e.g.,
What SOAP libraries exist for Python 3.x? ).
This may be the reason why the installation fails with
Command python setup.py egg_info failed with error code 1 in C:UserRaquelAppDataLocaTemppip_build_RaquelSOAPpy
edited May 23 '17 at 12:05
Community♦
11
answered May 30 '14 at 12:01
Thomas CokelaerThomas Cokelaer
8591610
BioServices depends on SOAPpy for the WSDL services.
Unfortunately, it looks like SOAPpy is not available for Python 3 (see e.g.,
What SOAP libraries exist for Python 3.x? ).
This may be the reason why the installation fails with
Command python setup.py egg_info failed with error code 1 in C:UserRaquelAppDataLocaTemppip_build_RaquelSOAPpy
edited May 23 '17 at 12:05
Community♦
11
answered May 30 '14 at 12:01
Thomas CokelaerThomas Cokelaer
8591610
edited May 23 '17 at 12:05
Community♦
11
edited May 23 '17 at 12:05
Community♦
11
edited May 23 '17 at 12:05
Community♦
11
11
answered May 30 '14 at 12:01
Thomas CokelaerThomas Cokelaer
8591610
answered May 30 '14 at 12:01
Thomas CokelaerThomas Cokelaer
8591610
answered May 30 '14 at 12:01
Thomas CokelaerThomas Cokelaer
8591610
8591610
add a comment |
add a comment |
Thanks for contributing an answer to Stack Overflow!
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f23463896%2fpython-3-4-bioservices-installation%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Can you post the error messages you are getting as well as how you are doing it?
– drum
May 5 '14 at 2:28
I do this in the windows powershell with admin rights. python pip install bioservices and the error message is: File "<stdin>", line 1 pip install bioservices ^ SyntaxError: invalid syntax
– user3602771
May 5 '14 at 14:54
Another method to installing is to copy the bioservices folder into your
c:/python/Libdirectory. Then runpython setup.py install.– drum
May 5 '14 at 17:58
@drum thanks that worked, but now using the extention gives me the following error
– user3602771
May 9 '14 at 23:14
BioServices v$Id: init.py 320 2014-02-28 13:31:27Z cokelaer $$, $Rev: 320 $ warning: pandas is not installed on your system Some features requires this library and future version of BioServices may use it. Traceback (most recent call last): File "C:UsersRaquelDocumentsUniversidadePythonworkspaceArrayarray.py", line 6, in <module> from bioservices import arrayexpress File "C:Python34libsite-packagesbioservices-1.2.6-py3.4.eggbioservices_init_.py", line 21, in <module> ImportError: No module named 'services'
– user3602771
May 9 '14 at 23:19